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Home / Archives for Vanden Eynden E

Genome Detective: an automated system for virus identification from high-throughput sequencing data

  • Autores: Vilsker M, Moosa Y, Nooij S, Fonseca V, Ghysens Y, Dumon K, Pauwels R, Alcantara LC, Vanden Eynden E, Vandamme AM, Deforche K, De Oliveira T
  • Ano de Publicação: 2019
  • Journal: Bioinformatics
  • Link: https://www.ncbi.nlm.nih.gov/pubmed/30124794

Genome Detective is an easy to use web-based software application that assembles the genomes of viruses quickly and accurately. The application uses a novel alignment method that constructs genomes by reference-based linking of de novo contigs by combining amino-acids and nucleotide scores. The software was optimized using synthetic datasets to represent the great diversity of […]
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PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context

  • Autores: Baele G, Bezenchek A, EucoHIV Study Group, Incardona F, Libin P, Nowé A, Sönnerborg A, Theys K, Vandamme AM, Vanden Eynden E
  • Ano de Publicação: 2017
  • Journal: Bioinformatics
  • Link: https://www.ncbi.nlm.nih.gov/pubmed/28961923

MOTIVATION: Clinicians, health officials and researchers are interested in the epidemic spread of pathogens in both space and time to support the optimization of intervention measures and public health policies. Large sequence databases of virus sequences provide an interesting opportunity to study this spread through phylogenetic analysis. To infer knowledge from large phylogenetic trees, potentially […]
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About GHTM

GHTM is a R&D Center that brings together researchers from IHMT with a track record in Tropical Medicine and International/Global Health. It aims at strengthening Portugal's role as a leading partner in the development and implementation of a global health research agenda. Our evidence-based interventions contribute to the promotion of equity in health and to improve the health of populations.

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+351 213 652 600
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