GHTM

Global Health and Tropical Medicine

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Home / Archives for Vandamme AM

Zika genomics urgently need standardized and curated reference sequences

  • Authors: Abecasis AB, Cuypers L, Dallmeier K, Libin P, Pineda-Peña AC, Theys K, Vandamme AM
  • Publication Year: 2017
  • Journal: PLoS Pathogens
  • Link: http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1006528

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Exploring resistance pathways for first-generation NS3/4A protease inhibitors boceprevir and telaprevir using Bayesian network learning

  • Authors: Ceccherini-Silberstein F, Cento V, Cuypers L, Di Maio VC, Libin P, Lunar MM, Nevens F, Nowé A, Poljak M, Schrooten Y, Theys K, Van Laethem K, Vandamme AM
  • Publication Year: 2017
  • Journal: Infection Genetics and Evolution
  • Link: https://www.sciencedirect.com/science/article/pii/S1567134817301582?via%3Dihub

Resistance-associated variants (RAVs) have been shown to influence treatment response to direct-acting antivirals (DAAs) and first generation NS3/4A protease inhibitors (PIs) in particular. Interpretation of hepatitis C virus (HCV) genotypic drug resistance remains a challenge, especially in patients who previously failed DAA therapy and need to be retreated with a second DAA based regimen. Bayesian […]
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Zika virus genetic diversity and selective pressure: importance for diagnostics, vaccines and therapeutics

  • Authors: Abecasis A, Cuypers L, Libin P, Theys K, Vandamme AM
  • Publication Year: 2017
  • Journal: Tropical Medicine & International Health

During the last years, an increasing number of Zika virus (ZIKV) infections has been reported in Asia and America. Due to socio-environmental factors that remain to be established, this arbovirus has explosively spread to more than 60 countries worldwide. ZIKV infections can result into severe clinical manifestations, with little knowledge available to date about how […]
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Phylogenetic analysis as a forensic tool in HIV transmission investigations

  • Authors: Abecasis AB, Pingarilho M, Vandamme AM
  • Publication Year: 2018
  • Journal: AIDS
  • Link: https://www.ncbi.nlm.nih.gov/pubmed/29280759

HIV Phylogenetic analysis: a literature review The authors performed a literature review to analyse HIV phylogenetic analyses methods as a forensic tool. Because HIV is a fast-evolving virus, HIV genomic sequences of several individuals can be used to investigate whether they belong to a transmission network. Since the infamous ‘Florida dentist case’ in the beginning […]
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Quantifying next generation sequencing sample pre-processing bias in HIV-1 complete genome sequencing

  • Authors: Baele G, Lemey P, Trovão NS, Van Laethem K, Van Wijngaerden E, Vandamme AM, Vrancken B
  • Publication Year: 2016
  • Journal: Viruses
  • Link: http://www.mdpi.com/1999-4915/8/1/12%20

Genetic analyses play a central role in infectious disease research. Massively parallelized “mechanical cloning” and sequencing technologies were quickly adopted by HIV researchers in order to broaden the understanding of the clinical importance of minor drug-resistant variants. These efforts have, however, remained largely limited to small genomic regions. The growing need to monitor multiple genome […]
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About GHTM

GHTM is a R&D Unit that brings together researchers with a track record in Tropical Medicine and International & Global Health. It aims at strengthening Portugal's role as a leading partner in the development and implementation of a global health research agenda. Our evidence-based interventions contribute to the promotion of equity in health and to improve the health of populations.

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